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Biochemistry, Biophysics, and Structural Biology Commons

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Retrospective Theses and Dissertations

Physical Sciences and Mathematics

2004

Articles 1 - 4 of 4

Full-Text Articles in Biochemistry, Biophysics, and Structural Biology

Protein-Protein Interaction And Electron Transfer: Case Of Cytochrome F And Cytochrome C6 , Tijana Žarković Grove Jan 2004

Protein-Protein Interaction And Electron Transfer: Case Of Cytochrome F And Cytochrome C6 , Tijana Žarković Grove

Retrospective Theses and Dissertations

We used photo-induced reaction as a tool to look to explore dynamics of the protein-protein interaction between cytochrome f and cytochrome c6 from C. reinhardtii. In our studies of electron transfer between 3Zncyt c6 and cyt f(III) we discovered two distinct intracomplex processes corresponding to electron transfer within diprotein complexes termed persistent and transient. The overall reaction remained biphasic and the rate constants for both processes were invariant to the change of ionic strength within the studied interval. The docking of these proteins is due to strong hydrophobic interaction slightly augmented by weak electrostatic attraction. We used covalent cross-linking ...


A Threading Approach To Protein Structure Prediction: Studies On Tnf-Like Molecules, Rev Proteins, And Protein Kinases , Yungok Ihm Jan 2004

A Threading Approach To Protein Structure Prediction: Studies On Tnf-Like Molecules, Rev Proteins, And Protein Kinases , Yungok Ihm

Retrospective Theses and Dissertations

The main focus of this dissertation is the application of the threading approach to specific biological problems. The threading scheme developed in our group targets incorporating important structural features necessary for detecting structural similarity between the target sequence and the template structure. This enables us to use our threading method to solve problems for which sequence-based methods are not very much useful. We applied our threading method to predict the three-dimensional structures of lentivirus (EIAV, HIV-1, FIV, SIV) Rev proteins. Predicted structures of Rev proteins suggest that they share a structural similarity among themselves (four-helix bundle). Also, the threading approach ...


Multifunctional Mesoporous Silica Nanospheres For Biosensor, Stimuli-Responsive Controlled-Release Drug Delivery Carriers And Gene Transfection Vectors , Cheng-Yu Lai Jan 2004

Multifunctional Mesoporous Silica Nanospheres For Biosensor, Stimuli-Responsive Controlled-Release Drug Delivery Carriers And Gene Transfection Vectors , Cheng-Yu Lai

Retrospective Theses and Dissertations

Structurally well-defined mesoporous silica materials with tunable pore size and narrow pore-size distribution have attracted much attention for their potential applications in sensing, drug delivery and gene transfer. A series of mesoporous silica nanosphere-based (MSN) nano-devices were synthesized and utilized for the aforementioned applications.;For sensing application, we provide a first example in utilization of a multi-functionalized mesoporous silica material to selectively detect dopamine. A second application, rooted in this work, is the selective detection of amino-containing neurotransmitters under physiological condition.;The drug delivery applications have been built around a controlled release drug delivery device. In the original conception, the ...


Mesoporous Silica Nanomaterials For Applications In Catalysis, Sensing, Drug Delivery And Gene Transfection , Daniela Rodica Radu Jan 2004

Mesoporous Silica Nanomaterials For Applications In Catalysis, Sensing, Drug Delivery And Gene Transfection , Daniela Rodica Radu

Retrospective Theses and Dissertations

The central theme of this dissertation is represented by the versatility of mesoporous silica nanomaterials in various applications such as catalysis and bio-applications, with main focus on biological applications of Mesoporous Silica Nanospheres (MSN). The metamorphosis that we impose to these materials from catalysis to sensing and to drug and gene delivery is detailed in this dissertation. First, we developed a synthetic method that can fine tune the amount of chemically accessible organic functional groups on the pores surface of MSN by exploiting electrostatic and size matching between the cationic alkylammonium head group of the CTAB surfactant and various anionic ...