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Deconvolution image processing

2014

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Gadph Single Molecule Mrna Fish 20141104tue, George Mcnamara Nov 2014

Gadph Single Molecule Mrna Fish 20141104tue, George Mcnamara

George McNamara

GADPH single molecule mRNA FISH 20141104Tue

Raw data on NVidia TITAN GPU card deconvolution using original Bruce and Butte 2013 Optics Express software running inside Fiji ImageJ.

B&B GPU Deconvolution Reference:

http://www.opticsinfobase.org/oe/fulltext.cfm?uri=oe-21-4-4766&id=249375

Acquired at 63x1x using leica plan apo 1.4 NA objective lens on Cooper lab Leica DMI6000 microscope, SOLA (initial release) LED lamp using only "green" LED, 554x Semrock exciter filter (in ASI ex wheel), Leica N3 (Cy3) filter cube, center 600 nm emission wavelength.

Hamamatsu FLASH4.0 sCMOS, 100 ms exposure time so 6.4 seconds ...


Gpu Deconvolution Good Result On 2048x2048x32 Plane Z-Series (Update From Dataset 56), George Mcnamara Oct 2014

Gpu Deconvolution Good Result On 2048x2048x32 Plane Z-Series (Update From Dataset 56), George Mcnamara

George McNamara

GPU Deconvolution Good result on 2048x2048x32 plane Z-series (update from dataset 56)

This web page and download is

http://0-works.bepress.com.library.simmons.edu/gmcnamara/62

Marc Bruce sent me the file here (web page 62) that is a preliminary bug fix (apparently of NVidia CUDA FFT code!!!) from the original 'raw' Z-series that is part of the

http://0-works.bepress.com.library.simmons.edu/gmcnamara/56

web page download. Please see that web page for details on the project (GADPH single molecule mRNA detection with Stellaris FISH probe sets).

Marc is:

MARC BRUCE, PHD

CTO and Co-Founder

MICROVOLUTION, LLC

http://www.microvolution.com/

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The ...