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Full-Text Articles in Life Sciences

Calciumsignalextract: A Matlab Gui To Automatically Extract The Activity Of Multiple Cells From Calcium Imaging Data, Stephan Meyer Zum Alten Borgloh Jan 2015

Calciumsignalextract: A Matlab Gui To Automatically Extract The Activity Of Multiple Cells From Calcium Imaging Data, Stephan Meyer Zum Alten Borgloh

Gilbert Laboratory

A Matlab GUI that automatically segments fluorescence image stacks into ROIs based on differential morphology and fluorescence activity of the individual cells. The time course data of each ROI gets extracted and plotted. External data from behavioral experiments and sensory stimuli can be integrated to compare for task and stimulus dependent neuronal events


Meyer Navigator: User Scanimage Functions To Show X/Y Positions Of The Stage/Objective In A Coordinate System, Stephan Meyer Zum Alten Borgloh Jan 2013

Meyer Navigator: User Scanimage Functions To Show X/Y Positions Of The Stage/Objective In A Coordinate System, Stephan Meyer Zum Alten Borgloh

Gilbert Laboratory

These Matlab functions extend Janelia Farms' ScanImage microscope control software. The functions allow the user to view, mark and track positions of the motor stage/objective in x, y, and z, which get displayed in a separate window. This helps to keep track of the stage movements, regions of interest and makes it easy to document areas imaged and map out the specimen being investigated. For detailed information about the functionality as well as installation, view the included manual file.


Ecoweb 1.1: Ecologists' Cooperative Web Bank, Joel E. Cohen Dec 2010

Ecoweb 1.1: Ecologists' Cooperative Web Bank, Joel E. Cohen

Cohen Laboratory

ECOWeB is a machine-readable database of several hundred food webs compiled from published sources by several ecologists.